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Search: Posts Made By: swbarnes2
Forum: Bioinformatics 03-13-2009, 02:53 PM
Replies: 236
Views: 585,967
Posted By swbarnes2
It's not assembly, it would be more like...

It's not assembly, it would be more like alignment, and I think I heard this is doable, but I don't work with any of the organisms they have there, so I didn't investigate for myself.
Forum: Bioinformatics 03-12-2009, 01:14 PM
Replies: 236
Views: 585,967
Posted By swbarnes2
They've been saying that gap5 will handle short...

They've been saying that gap5 will handle short reads for about a year, so I wouldn't hold your breath on that one.

If you are doing mouse or human or rat, UCSC can be worked with. I don't know...
Forum: Bioinformatics 02-16-2009, 10:59 AM
Replies: 236
Views: 585,967
Posted By swbarnes2
I think that Bowtie will also return the optimal...

I think that Bowtie will also return the optimal and sub-optimal matches.

Bowtie is a BWA program, that's the algorithm that the fastest aligners are based on.
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