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Forum: Bioinformatics 04-25-2018, 01:00 AM
Replies: 5
Views: 1,801
Posted By denisDDS
I have another problem: when using vcf0=,...

I have another problem: when using vcf0=, followed by files locations separated by comma, callvariants.sh create subdirectory instead of just creating files at specified location.
Forum: Bioinformatics 04-24-2018, 05:45 AM
Replies: 5
Views: 1,801
Posted By denisDDS
Same error here: downloaded BBMap 2 weeks ago,...

Same error here: downloaded BBMap 2 weeks ago, finishing my snp calling pipeline today, same problem and discovering the patch went out 10 days ago...

Thx for the fix ;)
Forum: Bioinformatics 04-24-2018, 04:09 AM
Replies: 678
Views: 177,762
Posted By denisDDS
Dear BBMap programmers/users, First of all,...

Dear BBMap programmers/users,

First of all, I want to thank you for your work. This set of tools is very pleasant to use and very well documented. Moreover, the pipeline are very useful and very...
Forum: Bioinformatics 04-23-2018, 03:28 AM
Replies: 0
Views: 541
Posted By denisDDS
Best strategy/tools to align poor quality reads on distant/degenerate short reference

Hello everybody,

Here is my problem:
I have +/-50 samples that I sequenced to examine SNP at key positions. I know my key positions.
I have 4 reference sequences (+/-2000bp). Two of them are...
Forum: Bioinformatics 03-29-2018, 01:47 AM
Replies: 1
Views: 488
Posted By denisDDS
Conversing consensu sequence to list of unique sequences

Hello everybody,
I have a fasta consensus sequence, (ex: XVGGAGTTTYYTBTSGGWTWCA) and I would like to generate all the possible non ambiguous sequences (just with ATGC).
I searched with various...
Forum: Introductions 03-29-2018, 01:41 AM
Replies: 0
Views: 950
Posted By denisDDS
Hello

Hello everybody,
My name is Denis and I am working mainly on MiSEQ data.
I am quite new in this kind of analysis.
Cheers,
Denis
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