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Search: Posts Made By: anton.kratz
Forum: Bioinformatics 11-03-2017, 05:51 PM
Replies: 7
Views: 2,509
Posted By anton.kratz
Hi Utkarsh, instead of installing from...

Hi Utkarsh,

instead of installing from source, a far easier way is to download the gh-pages branch Zip file from https://github.com/Hypercubed/DEIVA/archive/gh-pages.zip

You can just download...
Forum: Bioinformatics 10-18-2017, 10:48 PM
Replies: 3
Views: 1,922
Posted By anton.kratz
I am running into the very same error: ...

I am running into the very same error:

"Error in density.default(x, adjust = adj) : 'x' contains missing values"

I found various posts (stackoverflow, bioconductor support forum, biostars)...
Forum: Bioinformatics 01-07-2017, 05:01 PM
Replies: 7
Views: 2,509
Posted By anton.kratz
There is now also a publication for DEIVA: ...

There is now also a publication for DEIVA:

Harshbarger J, Kratz A, Carninci P. 2017. DEIVA: a web application for interactive visual analysis of differential gene expression profiles. BMC Genomics...
Forum: Bioinformatics 07-20-2016, 10:10 PM
Replies: 0
Views: 1,194
Posted By anton.kratz
Question Normalization, peal calling and differential analysis of ATAC-seq read counts

[content deleted - posted prematurely - I want to rephrase and make the question more clear]
Forum: Bioinformatics 06-20-2016, 07:21 AM
Replies: 7
Views: 2,509
Posted By anton.kratz
Thanks for the comment. If you want to try it out...

Thanks for the comment. If you want to try it out you don't need to install anything - just can just go the live instance at http://hypercubed.github.io/DEIVA/ and try a preloaded example dataset, no...
Forum: Bioinformatics 06-09-2016, 06:10 AM
Replies: 7
Views: 2,509
Posted By anton.kratz
Hi colindaven, DEIVA is extremely easy and...

Hi colindaven,

DEIVA is extremely easy and fast to install - please have a look at "Deploying DEIVA with your own data" in the GitHub readme. There are no server dependencies or plug-ins needed,...
Forum: Bioinformatics 06-05-2016, 08:54 PM
Replies: 7
Views: 2,509
Posted By anton.kratz
Lightbulb DEIVA: a web application for interactive visual analysis of differential gene express

Dear SEQanswers members,

we have developed a web app, DEIVA, for interactive visual analysis of differential gene expression results, such as you typically get from DESeq2 and edgeR.

The core...
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