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Search: Posts Made By: sghignone
Forum: Bioinformatics 11-06-2017, 04:24 AM
Replies: 2
Views: 345
Posted By sghignone
I supposed he has been busy...I 've wrote him...

I supposed he has been busy...I 've wrote him last week and got no replies, that's why I posted here. I'll give another try by email and with JGI staff.
Thanks!
s.-
Forum: Bioinformatics 11-06-2017, 02:59 AM
Replies: 4
Views: 642
Posted By sghignone
which is the "specific website" you're talking...

which is the "specific website" you're talking about? without this information it's pretty hard to provide you with useful hints.
Forum: Bioinformatics 11-06-2017, 02:53 AM
Replies: 2
Views: 345
Posted By sghignone
bbtools: how to properly set up rqcfilter

Dear all,
I've recently obtained some PE RNA-seq data from JGI. They have been cleaned using the rqcfilter tool (v. 37.17). Since I would like to uniform the cleaning method extending it to other...
Forum: Bioinformatics 04-09-2015, 06:30 AM
Replies: 0
Views: 920
Posted By sghignone
cummeRbund :: filter on repFpkm

Dear all,
I'm wondering whether anyone has already implemented a filter based on repFpkm in cummeRbund, so to select all those genes for which the Fpkm is above of a certain threshold for all the...
Forum: Bioinformatics 03-13-2015, 09:10 AM
Replies: 5
Views: 1,926
Posted By sghignone
hi! this thread is the closest I've found to my...

hi!
this thread is the closest I've found to my issue ...

I have 2 conditions (a control and a treatment), each with 3 replicates. How can I do if I want to get those genes showing FPKM > 1, for...
Forum: Bioinformatics 05-09-2012, 09:26 AM
Replies: 12
Views: 4,369
Posted By sghignone
Hi everybody! I'm facing the same problem on my...

Hi everybody!
I'm facing the same problem on my processed datasets, and here is my bash scripting approach.

The following code is just a backbone, but single steps have been tested like working...
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