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Forum: RNA Sequencing 10-26-2012, 04:44 AM
Replies: 3
Views: 1,357
Posted By toni_marco
I'm glad you got around it. Let me know if any...

I'm glad you got around it. Let me know if any other issue appears.
Toni
Forum: Bioinformatics 02-27-2012, 03:19 AM
Replies: 1
Views: 4,043
Posted By toni_marco
MicroRNAs from SOLiD machines

Hi,

If you have color-space sequences (SOLiD output) you may find interesting our last paper on the topic. You can use our pipeline to map reads to miRNA sequences downloaded from miRBase. We...
Forum: SOLiD 12-12-2011, 06:39 AM
Replies: 6
Views: 3,415
Posted By toni_marco
Detection of microRNAs in color-space

Hi,

We just published a paper on microRNA detection using color space. I think that may be of your interest. We discuss how to efficiently remove adaptors and show why SOLiD RNA2MAP may be...
Forum: SOLiD 12-12-2011, 06:35 AM
Replies: 6
Views: 4,741
Posted By toni_marco
New script to process color-space reads to detect microRNAs

Hi,

It's me again. After a while we got accepted a paper on color-space and microRNA detection. We discussed some aspects of trimming of the first reads and how to use Bowtie for an efficient...
Forum: SOLiD 11-04-2010, 03:51 AM
Replies: 6
Views: 4,741
Posted By toni_marco
I'm sorry to not to agree. Bowtie is a great...

I'm sorry to not to agree. Bowtie is a great program I've been using extensively in base-space. However, it does trim an extra base at the 5' end of the read in color-space. If you convert the...
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