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Search: Posts Made By: Deutsche
Forum: Bioinformatics 06-20-2011, 09:19 PM
Replies: 18
Views: 5,254
Posted By Deutsche
Guys from NCBI said me that they don't give this...

Guys from NCBI said me that they don't give this documentation anybody. And if you want to use the SRA format then you need to use their API.
Forum: Bioinformatics 06-15-2011, 07:37 AM
Replies: 18
Views: 5,254
Posted By Deutsche
Yes, it is. C++ with Qt4.

Yes, it is. C++ with Qt4.
Forum: Bioinformatics 06-15-2011, 07:20 AM
Replies: 18
Views: 5,254
Posted By Deutsche
I'm working in the UGENE project and my next task...

I'm working in the UGENE project and my next task is integration SRA format supporting into our tool. It is not simple to have just included SRA SDK into UGENE because of our tool is a...
Forum: Bioinformatics 06-15-2011, 07:08 AM
Replies: 18
Views: 5,254
Posted By Deutsche
Could you tell me please how did you got this...

Could you tell me please how did you got this address?
Forum: Bioinformatics 06-15-2011, 07:04 AM
Replies: 18
Views: 5,254
Posted By Deutsche
It is very difficult to understand a format...

It is very difficult to understand a format specification from 12 Mbs of code :) so I want to try the simplest way at the beginning. If nothing is successful I will try to analyse the source code.
Forum: Bioinformatics 06-15-2011, 06:37 AM
Replies: 18
Views: 5,254
Posted By Deutsche
Yes, I mean the binary file format. Ok, I will...

Yes, I mean the binary file format. Ok, I will write them and will answer you if I find something.
Forum: Bioinformatics 06-15-2011, 02:27 AM
Replies: 18
Views: 5,254
Posted By Deutsche
Lightbulb SRA format

Does anybody know about the SRA format specification? Does one exist?
I just have found API on the NCBI site which can help to read SRA files but I haven't found any information about the format...
Forum: Bioinformatics 04-14-2011, 09:19 AM
Replies: 4
Views: 4,324
Posted By Deutsche
Thank you. Could You tell me what is the basis of...

Thank you. Could You tell me what is the basis of your answer? Is it your experience or some knowledge or something else?
Forum: Bioinformatics 04-14-2011, 06:26 AM
Replies: 4
Views: 4,324
Posted By Deutsche
The best short read aligner

Hello! I haven't found a compatible forum for this thread and I have desided to write here.

Scientists, could you tell me please which short read aligner is the fastest?
I thought that it is...
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