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Search: Posts Made By: affi
Forum: Bioinformatics 02-25-2014, 01:01 AM
Replies: 2
Views: 2,758
Posted By affi
Thanks . It didn't help me . Have posted...

Thanks .

It didn't help me . Have posted the query to the dev.list and waiting for the reply .

Thanks again .
Forum: Bioinformatics 02-24-2014, 03:10 AM
Replies: 2
Views: 2,758
Posted By affi
Post Galaxy server fails to restart

Hi ,

Am trying to install local instance of Galaxy . After unzipping the source , server starts properly with ./run.sh --reload command . However after the process is killed and again server is...
Forum: Bioinformatics 02-21-2014, 03:14 AM
Replies: 9
Views: 1,349
Posted By affi
Yeah its's 8 core with 8GB RAM . Hope that helps...

Yeah its's 8 core with 8GB RAM . Hope that helps . Will try the installation on Monday on 64bit .

Thanks again .
Forum: Bioinformatics 02-21-2014, 03:04 AM
Replies: 9
Views: 1,349
Posted By affi
Yes am still using 32-bit centos . Is that the...

Yes am still using 32-bit centos . Is that the reason for the failed compilation ? . Am installing 64bit today . Will check again on that .

Thanks again .
Forum: Bioinformatics 02-21-2014, 01:19 AM
Replies: 9
Views: 1,349
Posted By affi
Updated the GCC version . The previous error was...

Updated the GCC version . The previous error was resolved however make again failed with the following error -

/home/aftab/Desktop/NGS/software/bin/lib/libbam.a(bgzf.o): In function `worker_aux':...
Forum: Bioinformatics 02-20-2014, 03:17 AM
Replies: 9
Views: 1,349
Posted By affi
Thanks . Will upgrade and try once again . Yeah...

Thanks . Will upgrade and try once again . Yeah mostly going to work on human genome . Most software flags out of memory on 32 bit . Also it normal i5 machine .
Forum: Bioinformatics 02-20-2014, 03:05 AM
Replies: 9
Views: 1,349
Posted By affi
Its 32bit centos 5.6 . and GCC version 4.1.2

Its 32bit centos 5.6 . and GCC version 4.1.2
Forum: Bioinformatics 02-20-2014, 02:26 AM
Replies: 9
Views: 1,349
Posted By affi
Post TopHat installation fails

Hi ,

Tried installing tophat-2.0.10 . But while doing make it flags following error -

/usr/local/samtools-0.1.19/bgzf.c:409: undefined reference to `__sync_fetch_and_add_4'
collect2: ld...
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