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Forum: Academic/Non-Profit Jobs 09-24-2015, 01:11 PM
Replies: 0
Views: 785
Posted By ning
Job Opening: Computational Biologist, Morgridge Institute for Research

The Morgridge Institute for Research seeks a Computational Biologist with strong systems design and programming skills, experience in statistical analysis, and the ability to work collaboratively...
Forum: Bioinformatics 05-18-2011, 01:49 PM
Replies: 5
Views: 4,387
Posted By ning
Thanks for the comment! I'm just kind of...

Thanks for the comment!
I'm just kind of thinking when we run DESeq or edgeR, both of them are assuming that different lanes follow a Negative Binomial distribution with the same "overdisperse...
Forum: Bioinformatics 05-18-2011, 01:21 PM
Replies: 5
Views: 4,387
Posted By ning
I think maybe you could roughly look at the mean...

I think maybe you could roughly look at the mean and var of each gene. If the var/mean is much higher than 1, then you may treat them as "bilogical rep"? And if the var/mean is around 1, you may...
Forum: RNA Sequencing 04-26-2011, 09:00 AM
Replies: 3
Views: 7,449
Posted By ning
Hi aquila ...

Hi aquila

http://answerpot.com/showthread.php?572032-edgeR+normalization+factors
https://stat.ethz.ch/pipermail/bioc-sig-sequencing/2011-February/001810.html

For edgeR, I guess you need to...
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