SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: GenoMax
Forum: Bioinformatics 02-03-2021, 12:35 PM
Replies: 39
Views: 33,238
Posted By GenoMax
Alba: You need to make sure there are no spaces...

Alba: You need to make sure there are no spaces between input options. Try the following.


reformat.sh...
Forum: Bioinformatics 09-26-2019, 04:18 AM
Replies: 39
Views: 33,238
Posted By GenoMax
Did you move any of the bbmap folder contents...

Did you move any of the bbmap folder contents after you downloaded and uncompressed bbmap code?

Make sure the top level directory with BBMap is in your $PATH. Something like export...
Forum: Bioinformatics 02-14-2019, 06:50 AM
Replies: 39
Views: 33,238
Posted By GenoMax
You could use `repair.sh` to separate the...

You could use `repair.sh` to separate the singletons out afterwards.
Forum: Bioinformatics 08-02-2018, 06:08 AM
Replies: 39
Views: 33,238
Posted By GenoMax
You can use reformat.sh in=your_file.fastq...

You can use reformat.sh in=your_file.fastq out=newfile.fa to convert the reads to fasta format.

That said I think mapPacBio.sh should automatically split reads longer than 6k when it does...
Forum: Bioinformatics 03-20-2018, 04:58 AM
Replies: 39
Views: 33,238
Posted By GenoMax
faSplit ...

faSplit (http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSplit)from Jim Kent's utilities is a much better option for splitting fasta files.

Run faSplit to look at inline help for...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 05:50 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO