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Forum: Epigenetics 08-12-2013, 01:12 AM
Replies: 5
Views: 5,382
Posted By xxatbio
indeed, small p-value with high FDR is not rare. ...

indeed, small p-value with high FDR is not rare.
Quote from MACS FAQ page:
"I'm looking into using the FDR values calculated from MACS, and am getting some odd behavior. In one case, the...
Forum: Epigenetics 08-12-2013, 12:06 AM
Replies: 0
Views: 1,783
Posted By xxatbio
Smile For ChIP-seq, maximal coverage at a peak?

For ChIP-seq data, what is the maximal coverage at a peak? How to calculate it? Thank you!!!

The coverage is defined as :
Number of (extended) reads aligning over each nucleotide position. Is...
Forum: Bioinformatics 08-11-2013, 02:51 AM
Replies: 2
Views: 2,486
Posted By xxatbio
Thumbs up Thank you !

Thank you !
Forum: Bioinformatics 08-10-2013, 06:39 AM
Replies: 2
Views: 2,486
Posted By xxatbio
Smile Given BAM/SAM file, where to find its read length information?

Given BAM/SAM file(for example the BAM file I posted below), where to find its read length information?
Thank you!!

a BAM file by samtool view

SL-XAN_2_FC30BV1AAXX:1:47:1108:971 161 ...
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