Forum: Bioinformatics
11-22-2010, 04:24 PM
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Replies: 2
Views: 2,371
gsAssembler - predicted genome size?
Hello a I have a quick question concerning "newbler" gsassembler(v2.3). Can anyone suggest how to find the predicted genome size from the output of a de novo assembly?
To calc the n50 stat the...
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Forum: General
11-02-2010, 05:50 PM
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Replies: 4
Views: 3,751
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Forum: General
10-29-2010, 10:21 PM
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Replies: 4
Views: 3,751
Identifying gene name synonyms
A quick question.
Using Entez database or AmiGO, How to you find all synonyms of a particular gene in other genomes without falling back on a sequence homology search.
For example. Gene psaB...
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Forum: 454 Pyrosequencing
03-28-2010, 09:07 PM
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Replies: 3
Views: 2,943
great...
The assembly finished in 13 hours: ...
great...
The assembly finished in 13 hours:
start: Sat Mar 27 19:21:59
stop: Sun Mar 28 08:25:07
What is the advantage of increasing the ml length or mi length with low coverage reads?...
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Forum: 454 Pyrosequencing
03-26-2010, 06:23 PM
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Replies: 3
Views: 2,943
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Forum: Bioinformatics
02-21-2009, 02:07 PM
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Replies: 3
Views: 2,516
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Forum: Bioinformatics
02-20-2009, 10:02 AM
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Replies: 3
Views: 2,516
Solexa.abi and 454 seq data.
Greetings, I am new to assembly please bear with me .
Question: Is Mira or Velvet compatible with Solexa.abi.contigs and 454 reads?
Input:
ch_abi_contigs.fa
No of Sequences = 2527
Total...
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