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Forum: Introductions 06-03-2010, 10:38 PM
Replies: 4
Views: 1,652
Posted By aghazalp
thanx dario, I looked at them and nothing stands...

thanx dario, I looked at them and nothing stands out. Am I the only one who has this problem?

What can help me is if I could get my hands on a set of reads from mouse RNA which I know should work...
Forum: Introductions 06-03-2010, 01:07 AM
Replies: 4
Views: 1,652
Posted By aghazalp
Hi Dario, I was thinking the same way as you...

Hi Dario,

I was thinking the same way as you mentioned in your reply so I just run the entire sequence file which took me about 8 hours for about 20 million sequences but I got the same verbose...
Forum: Bioinformatics 06-02-2010, 05:35 PM
Replies: 10
Views: 3,285
Posted By aghazalp
same problem here

Hi,

it seems like I have the same problem and I tried to change the CFLAGS to CXXFLAGS but it doesnt seem to work for me either. I am using Ubuntu 8.1
Forum: Introductions 06-02-2010, 11:29 AM
Replies: 4
Views: 1,652
Posted By aghazalp
warning message on junction databse

Hello everyone, I just signed up and wanted to say hi and also ask a question. I just installed tophat and bowtie and created a test file from my large fastq file. This test file has only ten...
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