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Search: Posts Made By: simono101
Forum: Bioinformatics 05-28-2014, 05:38 AM
Replies: 674
Views: 167,130
Posted By simono101
@GenoMax, Thanks, yes your second post is...

@GenoMax,
Thanks, yes your second post is exactly what I was referring to. I can't seem to find a way to escape the spaces in a directory path (but I too successfully called it directly rather than...
Forum: Bioinformatics 05-28-2014, 02:41 AM
Replies: 674
Views: 167,130
Posted By simono101
Escaping spaces using the shell script

Hi Brian,
I can't seem to work out how to pass a filepath with spaces in it to BBMap using the shell script. Nothing that I normally would use seems to work...

e.g.

~/bbmap/bbmap.sh...
Forum: Bioinformatics 05-27-2014, 05:13 AM
Replies: 0
Views: 2,291
Posted By simono101
BCFTOOLS 0.2 Filter problems

Hi all,
First post here, so I hope I am posting in the right place. I am trying to use BCFTOOLS (version: 0.2.0-rc8-10-g7a1041c) to filter a bcf file but I am running into a couple of problems and I...
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