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Forum: Bioinformatics 03-23-2017, 08:34 AM
Replies: 5
Views: 2,212
Posted By mastal
Yes, each read and its mate are from the same...

Yes, each read and its mate are from the same fragment, starting from different ends of the fragment.
Forum: Bioinformatics 03-22-2017, 12:45 PM
Replies: 5
Views: 2,212
Posted By mastal
Mate Reference Sequence will not be '=' if the...

Mate Reference Sequence will not be '=' if the mate maps to a different contig or chromosome (the sequences listed with @SQ at the start of the sam file).

Occasionally you get read pairs where the...
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