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Forum: Bioinformatics 11-12-2015, 12:34 AM
Replies: 0
Views: 1,359
Posted By MAPK
Complete genomics data analysis, pipeline version differences and batch efffect

I am working with Complete genomics data from pipeline version 2.5. I need to add 1000 genome data to my sample and make a multigenome vcf file. Since the 1K genome project data are from 2.0.0...
Forum: Bioinformatics 11-05-2015, 10:42 PM
Replies: 0
Views: 2,393
Posted By MAPK
SNP coverage using Pile up From RSamtools

Hi, I am using pile up from R Package, ‘Rsamtools’. I could not get the correct coverage for the SNP positions I am looking for in my BAM files. The issue is that I do not have the strand information...
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