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Forum: Bioinformatics

08-25-2010, 03:44 AM

Replies: 23

Lastz help

Views: 7,650

Posted By Esther

Lastz help

Hi all,

I'm trying to get lastz to compare some sequences to the human reference genome. This is the command I'm using:

lastz /path/to/data/fastafile.fasta[multiple]...

Forum: Bioinformatics

08-04-2010, 03:19 AM

Replies: 3

BFAST match/localalign help

Views: 2,018

Posted By Esther

Worked like a charm, thank you. I feel kinda...

Worked like a charm, thank you. I feel kinda silly for not thinking of this. The strange output is gone and the localalign is running, so we'll see how it workes out.

Forum: Bioinformatics

08-03-2010, 11:56 PM

Replies: 3

BFAST match/localalign help

Views: 2,018

Posted By Esther

BFAST match/localalign help

Hi,

I'm trying to create a bfast localalign but it doesn't work. I've located the problem with bfast match. The match appears to be working, but I can't find the *.bmf file. This is what happens:...

Forum: Bioinformatics

07-28-2010, 12:17 AM

Replies: 4

BFAST fasta2brg help

Views: 2,374

Posted By Esther

Thank you, the dos2unix did the trick. The...

Thank you, the dos2unix did the trick. The reference file was indeed created in Windows.

Forum: Bioinformatics

07-27-2010, 05:40 AM

Replies: 4

BFAST fasta2brg help

Views: 2,374

Posted By Esther

BFAST fasta2brg help

I'm trying to create a reference genome with BFAST using the inhouse reference genome. This file contains all the chromosomes of the human genome and is ~3 GB large. However, when I execute the...

Showing results 1 to 5 of 5

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