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Search: Posts Made By: biocomfun
Forum: Bioinformatics 12-18-2012, 12:15 AM
Replies: 252
Views: 107,101
Posted By biocomfun
for the TAB delimited format like: <contig1>...

for the TAB delimited format like:

<contig1> <startpos_on_contig1> <endpos_on_contig1> <contig2> <startpos_on_contig2> <endpos_on_contig2>

E.g.
contig1 100 150 contig1 350 300
contig1 4000...
Forum: 454 Pyrosequencing 02-12-2012, 04:00 AM
Replies: 6
Views: 4,371
Posted By biocomfun
you can send a mail to the ahthor ! Good luck !

you can send a mail to the ahthor ! Good luck !
Forum: 454 Pyrosequencing 01-29-2012, 05:27 PM
Replies: 6
Views: 4,371
Posted By biocomfun
I use 30x solexa reads to correct 10x 454...

I use 30x solexa reads to correct 10x 454 reads specifically,with a improved version of Coral by author,it can specify a set of reads to correct with a different sets of data .
Forum: 454 Pyrosequencing 09-14-2011, 02:21 AM
Replies: 6
Views: 4,371
Posted By biocomfun
yeah,thanks a lot ,i have done the work by Coral...

yeah,thanks a lot ,i have done the work by Coral ,and assemble with the software Newbler,it has a great improve for genome size .
for my genome is highly heterozygosis, i think it is useful !
Forum: 454 Pyrosequencing 09-10-2011, 10:30 AM
Replies: 6
Views: 4,371
Posted By biocomfun
454 reads correct with illumina

by 454 and illumina reads assemble 300m genome :

my schedule is
1 correct the 454 reads by illumina 90bp reads by Coral (the attachment)
2 assemble by celera or newbler

do you anyone...
Forum: General 09-04-2011, 07:35 AM
Replies: 2
Views: 3,861
Posted By biocomfun
Smile Maybe you can download another version or the...

Maybe you can download another version or the compiled version.
mira_3.4.0_prod_linux-gnu_x86_64_static.tar.bz2
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