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Forum: RNA Sequencing 11-29-2010, 05:33 AM
Replies: 3
Views: 4,866
Posted By Line
Thanks, I checked it and found that I needed...

Thanks,

I checked it and found that I needed to sort my .bam file and then indexing the sorted.bam file. Now is working!
Forum: RNA Sequencing 11-26-2010, 07:03 AM
Replies: 3
Views: 4,866
Posted By Line
problems visualizing bam files in IGV

Hello,

I am aligning RNA-seq data using Bowtie and when I tried to visualize the bam file in IGV, everything is fine except that there are not reads in chrX and chrY. However I have coverage of...
Forum: RNA Sequencing 07-12-2010, 02:37 AM
Replies: 3
Views: 3,933
Posted By Line
Unhappy Error message in cuffcompare

Hello,

I am trying to run cuffcompare with the transcript_GTF file from cufflinks but I get this error message:
Error: no ID found for GFF record start
Could you please help me with this?...
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