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Search: Posts Made By: gtduarte
Forum: Bioinformatics 11-02-2017, 10:57 AM
Replies: 3
Views: 1,237
Posted By gtduarte
Hi Matt, It worked, thanks a lot!!! You...

Hi Matt,

It worked, thanks a lot!!! You saved my day xD

Cheers,

Gustavo
Forum: Bioinformatics 11-01-2017, 12:50 AM
Replies: 3
Views: 1,237
Posted By gtduarte
Script for creating GO annotation file from Interproscan output

Dear comunity,

I am working with a non-model organism, thus I have to use alternative approaches for many of the analyses. At the moment I want to run the GO enrichment analysis of my...
Forum: Bioinformatics 01-29-2016, 02:15 PM
Replies: 1
Views: 1,182
Posted By gtduarte
Hello ninni, I am also figuring out how to...

Hello ninni,

I am also figuring out how to run MISO. Many ppl recommend it, but even the installation is not trivial and also not easy to find solutions for the errors.

In my case, I have two...
Forum: RNA Sequencing 01-25-2016, 11:32 AM
Replies: 2
Views: 2,304
Posted By gtduarte
Hello dan, thanks for replying. I tried what you...

Hello dan, thanks for replying. I tried what you suggested, running cufflinks with the -g option instead of -G, but unfortunately it didn't work:

$ cufflinks -o cuff_g -g...
Forum: RNA Sequencing 01-24-2016, 07:40 AM
Replies: 2
Views: 2,304
Posted By gtduarte
Gene id changed to XLOC... cuffmerge issue?

Dear community,

I am trying to run differential expression analysis with TopHat and Cufflinks, and alternative splicing analysis with MISO (for which I need TopHat outputs).

However, I find...
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