SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 3 of 3
Search took 0.02 seconds.
Search: Posts Made By: catagui
Forum: Bioinformatics 01-19-2018, 11:06 AM
Replies: 304
Views: 78,236
Posted By catagui
Hi I would like to use bbduk to filter the reads...

Hi I would like to use bbduk to filter the reads that map to a genome. I have 48 pair samples and want to make sure I understand how to input the file.
My sample are are Pair end and are labeled as...
Forum: Bioinformatics 04-10-2017, 09:43 AM
Replies: 639
Views: 126,623
Posted By catagui
Hi Brian thanks for your reply. I haven't...

Hi Brian thanks for your reply.

I haven't been able to improve the mapping percentage. I tried your suggestion (bbmap/mapPacBio.sh k=13 maxindel=200000 maxlen=60000 minlen=40) and still get 13%. ...
Forum: Bioinformatics 03-27-2017, 01:00 PM
Replies: 639
Views: 126,623
Posted By catagui
Bbmap for mapping a transcriptome to a genome

Hi Brian,
I would like to use Bbmap to map a transcriptome to a genome.
My first questions would be in the Results it saids:

Reads Used: 165317 (61187186 bases)

but the transcriptome that...
Showing results 1 to 3 of 3

 


All times are GMT -8. The time now is 11:28 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO