Go Back   SEQanswers > Search Forums

Showing results 1 to 4 of 4
Search took 0.01 seconds.
Search: Posts Made By: pederworning
Forum: Bioinformatics 10-02-2017, 07:05 AM
Replies: 0
Views: 365
Posted By pederworning
Unhappy Gviz Installation

Hello I am using R 3.2.3 on ubuntu 16.04 LTS and I can't the R package Gviz

I have done the following:



I think the problem...
Forum: 454 Pyrosequencing 09-09-2011, 02:49 AM
Replies: 30
Views: 19,625
Posted By pederworning
Thanks for the installation instructions, if you...

Thanks for the installation instructions, if you have java installed you need to make a link to /bin/java
to make it run:
$ which java
/bin$ sudo ln -s...
Forum: Bioinformatics 06-23-2011, 03:42 AM
Replies: 1
Views: 1,571
Posted By pederworning
VelvetOptimiser sam format

Dear Bioinformatic forum,

I am using VelvetOptimiser to see which parameters to use for Velvet denovo assembly, but I cannot get it to read sam files. It can read fasta and fastq but not sam.
Forum: Bioinformatics 04-08-2011, 07:04 AM
Replies: 4
Views: 5,987
Posted By pederworning
samtools sort stdout


I am mapping reads from bacterial sequences to reference genomes and I am using bwa and samtools. I am trying to set up a pipeline and want to use stdin and stdout and pipe the data to...
Showing results 1 to 4 of 4


All times are GMT -8. The time now is 05:33 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO