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Forum: General 11-10-2016, 11:15 AM
Replies: 2
Views: 2,550
Posted By dpryan
It'd be something like: ...

It'd be something like:

subprocess.call(["bowtie2", "-x", indexBaseName, "-U", fastqFile1, "S", "Outpufile.sam"])

However, I highly encourage you to not do this and instead use something like...
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