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Forum: Bioinformatics 03-04-2015, 12:50 AM
Replies: 6
Views: 1,308
Posted By manauwer
pbzip2 is an efficient way to compress data. ...

pbzip2 is an efficient way to compress data.
the command here will do the task

tar cf outputfile_name --use-compress-prog=pbzip2 inputfile_or_directory
Forum: Bioinformatics 01-22-2015, 09:38 PM
Replies: 1
Views: 1,684
Posted By manauwer
get coverage of a particular transcript from bedgraph

i have a bedgraph..

1 0 10540 0
1 10540 10564 4
1 10564 10569 5
1 10569 10590 7
1 10590 10614 3
1 10614 10619 2
1 10619 12045 0
Forum: Bioinformatics 12-25-2014, 10:16 PM
Replies: 2
Views: 2,262
Posted By manauwer
how to calculate RPKM from SAM

i am very new to bioinformatics and been trying to learn new things every day.

this time, i need to find out RPKM from a sam file. i mapped RNAseq reads to refMrna and have a sam file generated....
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