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Forum: Bioinformatics 04-08-2020, 03:55 AM
Replies: 0
Views: 763
Posted By polaxgr
Phylogenetics analysis between diverse species

Hello all,

Hope everyone is well.

So i was appointed with a task, and i need some guidance. Attention, the one that gave me the task may not have explained this very clearly. I will write what...
Forum: Bioinformatics 03-18-2020, 02:58 AM
Replies: 0
Views: 522
Posted By polaxgr
RNA de novo assembly - blasts - KEGG - GO

Hello,

I am a phd candidate to bioninformatics and with (almost) 0 guidance. Seeking help here.. I was asked to do a de novo RNA transcriptome assembly from a total RNA sequencing. After fastqc i...
Forum: Bioinformatics 02-10-2020, 02:19 AM
Replies: 0
Views: 626
Posted By polaxgr
Pfam search using hmmer but only for a specific taxonomy

I am trying to do a de novo assembly using Trinity. Using Transdecoder and blastp/hmmscan search to do annotation (using Uniprot/pfam databases). https://github.com/TransDecoder/TransDecoder/wiki ....
Forum: Bioinformatics 04-25-2019, 01:00 AM
Replies: 0
Views: 688
Posted By polaxgr
GOplot GOcluster plots

Hello all. I ve been trying to do some plots from GOplots in R. But i have some issues regarding GOcluster GOheat and GOVenn. With GOcluster (myprocess file is names of GO):

GOCluster(circ,...
Forum: Bioinformatics 02-13-2019, 05:18 AM
Replies: 0
Views: 622
Posted By polaxgr
hic-pro

Hello all. New to linux - bioinformatics in general. I am trying to install hic-pro but i keep getting this error : "pysam 0.7.7 detected. Version >= 0.8.3 required" while before i have installed it...
Forum: Introductions 03-02-2018, 02:47 AM
Replies: 0
Views: 1,126
Posted By polaxgr
Greeting from Greece

Hello all, I am from Athens, Greece. Doing my phd in bioinformatics (iPS cells mostly). Found some very helpful topics/questions here and thats why i registered.

fyi: many newbie questions will...
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