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Search: Posts Made By: kmavrommatis
Forum: Bioinformatics 12-09-2019, 02:30 PM
Replies: 678
Views: 184,613
Posted By kmavrommatis
reformat.sh Failed to auto-detect quality coding

Hi,
when I am running reformat.sh on a set of fastq files downloaded from SRA




The program crashes with the following error:
Forum: Bioinformatics 10-11-2018, 02:22 PM
Replies: 0
Views: 678
Posted By kmavrommatis
Sclust for hg38

Hi

Has anybody succesfully sclust using data aligned to hg38?
https://www.ncbi.nlm.nih.gov/pubmed/29844525

It appears to be an interesting algorithm, and tests on hg19 showed very promising...
Forum: Bioinformatics 02-18-2014, 02:25 PM
Replies: 0
Views: 2,250
Posted By kmavrommatis
SnpSift filters for dbNSFP fields

Hi,

I am trying to filter vcf files that were previously annotated using snpsift dbsnfp.

A typical line with the annotations looks like:
chr20 256727 rs3827147 T A 999.0 ...
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