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Search: Posts Made By: kmavrommatis
Forum: Bioinformatics 12-09-2019, 02:30 PM
Replies: 678
Views: 184,613
Posted By kmavrommatis Failed to auto-detect quality coding

when I am running on a set of fastq files downloaded from SRA

The program crashes with the following error:
Forum: Bioinformatics 10-11-2018, 02:22 PM
Replies: 0
Views: 678
Posted By kmavrommatis
Sclust for hg38


Has anybody succesfully sclust using data aligned to hg38?

It appears to be an interesting algorithm, and tests on hg19 showed very promising...
Forum: Bioinformatics 02-18-2014, 02:25 PM
Replies: 0
Views: 2,250
Posted By kmavrommatis
SnpSift filters for dbNSFP fields


I am trying to filter vcf files that were previously annotated using snpsift dbsnfp.

A typical line with the annotations looks like:
chr20 256727 rs3827147 T A 999.0 ...
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