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Forum: Bioinformatics 09-05-2014, 06:33 AM
Replies: 21
Views: 17,551
Posted By simpson
I got the same problem. I tried the verson 1.0,...

I got the same problem. I tried the verson 1.0, 0.1.19, 0.1.18 and none worked.
Any one can help to solve this problem.

Here are my command and error message:

samtools mpileup -ugf F.fna...
Forum: Bioinformatics 05-10-2013, 07:38 AM
Replies: 2
Views: 1,011
Posted By simpson
does anyone know this?

does anyone know this?
Forum: Bioinformatics 05-03-2013, 06:40 AM
Replies: 2
Views: 1,011
Posted By simpson
blast2go pie chart

i've used blast2go for annotation on linux. But i want a pie chart. Is there any script that i can use to generate a pie chart since My dataset is very large?
Forum: Bioinformatics 05-02-2013, 10:19 AM
Replies: 20
Views: 8,996
Posted By simpson
it's working now!!! Thank you very much!!

it's working now!!!
Thank you very much!!
Forum: Bioinformatics 04-30-2013, 01:35 PM
Replies: 20
Views: 8,996
Posted By simpson
sorry - - Python 2.6.6 (r266:84292, Oct 12...

sorry - -

Python 2.6.6 (r266:84292, Oct 12 2012, 14:23:48)
Forum: Bioinformatics 04-30-2013, 12:31 PM
Replies: 20
Views: 8,996
Posted By simpson
it is biopython 1.59

it is biopython 1.59
Forum: Bioinformatics 04-30-2013, 10:14 AM
Replies: 20
Views: 8,996
Posted By simpson
Traceback (most recent call last): File...

Traceback (most recent call last):
File "xml.py", line 70, in <module>
import xml.etree.cElementTree as ElementTree
File "/scratch/hpc/tianwenl/blastall/xml.py", line 70, in <module>
...
Forum: Bioinformatics 04-30-2013, 09:58 AM
Replies: 20
Views: 8,996
Posted By simpson
Thanks. another question: how could i execute the...

Thanks. another question: how could i execute the python script? Can you give me the command please?
Forum: Bioinformatics 04-30-2013, 09:41 AM
Replies: 20
Views: 8,996
Posted By simpson
I had already seen that website. But that seems...

I had already seen that website. But that seems not work. Do you have more specific script and command that i can use directly?
Forum: Bioinformatics 04-30-2013, 08:44 AM
Replies: 20
Views: 8,996
Posted By simpson
parse xml to tabular format

Hi, I've done blastx with -m 7 option. The output file is .xml.
But i'd like to do a data analysis to know the percentage of my unigene set has a blast hit. So i want to cover the .xml to another...
Forum: 454 Pyrosequencing 01-24-2013, 09:59 AM
Replies: 0
Views: 686
Posted By simpson
Titration results

Hi, I got the .sff files from both titration and bulk sequencing.
Should i combine these files together for further analysis, or not? Why?

Thanks.
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