Forum: Bioinformatics
10-03-2014, 01:56 PM
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Replies: 5
Views: 1,605
Thanks amitm,
I did and it worked fine. Now I...
Thanks amitm,
I did and it worked fine. Now I have gene names for all my transcripts. By change do you know how to have also Saccharomyces gene descriptions? This would be ideal.
I think in...
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Forum: Bioinformatics
10-03-2014, 09:26 AM
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Replies: 5
Views: 1,605
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Forum: Bioinformatics
10-03-2014, 08:22 AM
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Replies: 5
Views: 1,605
BLAST comparison between two sets of sequences
Hello everyone,
I have a set of sequences generated with Trinity and I want to compare them with S. cerevisiae. I have downloaded the S. cerevisiae protein set from the SGD. Since S. cerevisiae is a...
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Forum: Introductions
10-03-2014, 08:03 AM
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Replies: 1
Views: 1,255
BLAST comparison between two sets of sequences
Hello everyone,
I have a set of sequences generated with Trinity and I want to compare them with S. cerevisiae. I have downloaded the S. cerevisiae protein set from the SGD. Since S. cerevisiae is a...
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Forum: Introductions
11-29-2012, 10:35 AM
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Replies: 4
Views: 2,050
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Forum: RNA Sequencing
11-28-2012, 03:36 PM
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Replies: 27
Views: 59,984
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Forum: Introductions
11-26-2012, 04:42 PM
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Replies: 4
Views: 2,050
Hello Jim,
I see you are at the JGI and I...
Hello Jim,
I see you are at the JGI and I though to ask you an advice/question. I am performing RNAseq analysis using a yeast whose genome sequence is available on the JGI website. I downloaded both...
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Forum: RNA Sequencing
11-26-2012, 04:30 PM
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Replies: 27
Views: 59,984
As you guys can see in the previous messages, I...
As you guys can see in the previous messages, I am new in this field. I am using the public Galaxy server, and for the first time I run sample with TopHat-Cufflink-Cuffcompare-Cuffdiff. Can anyone...
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Forum: RNA Sequencing
11-19-2012, 09:34 PM
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Replies: 27
Views: 59,984
Hello,
I tried to run cufflinks after TopHat...
Hello,
I tried to run cufflinks after TopHat mapping and as a genome reference annotation it requires a file in gtf format. I downloaded the genome annotation from the JGI website (I am working with...
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Forum: RNA Sequencing
11-19-2012, 08:32 PM
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Replies: 27
Views: 59,984
Thanks jgoecks,
Yes, I am using the public...
Thanks jgoecks,
Yes, I am using the public Galaxy server.
As you said the job took a while to start, but after that it was quick enough. Now there is an update of the server so I have to wait....
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Forum: RNA Sequencing
11-18-2012, 11:22 AM
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Replies: 27
Views: 59,984
Hi all,
I am new in the forum and also in the...
Hi all,
I am new in the forum and also in the RNA seq analysis field.
I just a got the results of my RNA sequencing and I am trying to map my reads using tophat on galaxy. I am working with...
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