Forum: Bioinformatics
12-30-2013, 01:30 AM
|
|
Replies: 0
Views: 2,561
|
|
Forum: Bioinformatics
07-28-2013, 08:06 PM
|
|
Replies: 2
Views: 1,619
Genomic data plotting/visualization
Hi all,
I was going through some gneomic articles and found several similar figures with similar layout/format. Is there any software or R-module for ploting such multi-dimentional figures (number...
|
|
Forum: Bioinformatics
03-21-2013, 01:43 PM
|
|
Replies: 3
Views: 1,174
Thanx GenoMax for quick reply.
wordCluster...
Thanx GenoMax for quick reply.
wordCluster is doing what I already did. I have identified regulatory elements from my genome sequence. Now I want to find out the occurrence of such regulatory...
|
|
Forum: Bioinformatics
03-21-2013, 07:29 AM
|
|
Replies: 3
Views: 1,174
random occurrence of regulatory element in genome
Hi all,
I have detected some regulatory sequences of 13 mer from genome sequencing study. The 13-mer has a consensus sequence of GNACANNNTGTNC. How can I calculate occurrence of this 13-mer in the...
|
|
Forum: Bioinformatics
08-18-2012, 12:07 PM
|
|
Replies: 5
Views: 10,237
|
|
Forum: Bioinformatics
08-16-2012, 06:38 AM
|
|
Replies: 5
Views: 10,237
Thnx colindaven,
I looked into samtools view...
Thnx colindaven,
I looked into samtools view -L option but that is not what I am looking for.
Let me explain the problem,
I have targeted DNA sequencing data from Illumina. After aligning to...
|
|
Forum: Bioinformatics
08-14-2012, 07:21 AM
|
|
Replies: 5
Views: 10,237
|
|
Forum: Bioinformatics
06-19-2012, 02:21 AM
|
|
Replies: 2
Views: 3,343
|
|
Forum: Bioinformatics
06-18-2012, 01:36 AM
|
|
Replies: 2
Views: 3,343
Filter paired & mapped reads from SAM/BAM file
Hi,
I have SAM/BAM files of paired end Illumina sequencing obtained by BWA.
I want to filter out all reads having "proper pair" and both the reads of pair aligned to references. How can I filter...
|
|
Forum: Bioinformatics
03-08-2012, 01:27 PM
|
|
Replies: 2
Views: 1,264
|
|
Forum: Bioinformatics
03-08-2012, 09:47 AM
|
|
Replies: 2
Views: 1,264
First base of reads SNP or false result?
Hi,
I am using 5 samples pooled DNA Targeted sequencing data (Illumina FASTQ) and using BWA - GATK for mapping and variant calling. In variant calls (vcf files), I find that at aparticular position...
|
