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Forum: Bioinformatics 08-13-2012, 03:46 AM
Replies: 8
Views: 2,375
Posted By ashiq.hussain
thank you all. The closet homologue will be...

thank you all.
The closet homologue will be Drosophila melanogastor as we have also sequence a new Drosophila specie.

We want to find a group of GPCRs genes already annotated in Drosophila in...
Forum: Bioinformatics 08-08-2012, 10:43 AM
Replies: 8
Views: 2,375
Posted By ashiq.hussain
thanks Maubp. How do I turn the new contigs...

thanks Maubp.
How do I turn the new contigs into a BLAST database?
thanks again
Forum: Bioinformatics 08-08-2012, 01:43 AM
Replies: 8
Views: 2,375
Posted By ashiq.hussain
newly sequenced Genome-problems in blast with old one.

Dear All,
We have sequenced new genome of an insect. The sequence we got is in fasta nucleotide scaffold form.

>scaffold 7 4.3...
Forum: RNA Sequencing 07-12-2011, 01:17 PM
Replies: 11
Views: 10,207
Posted By ashiq.hussain
thank you all.

thank you all.
Forum: RNA Sequencing 07-12-2011, 12:28 PM
Replies: 11
Views: 10,207
Posted By ashiq.hussain
why we use -l in the command?

why we use -l in the command?
Forum: RNA Sequencing 07-12-2011, 11:57 AM
Replies: 11
Views: 10,207
Posted By ashiq.hussain
number of read in RNA-seq?

another biologist here.

I got RNA sequence (in .txt format) back from sequencing facility. Each file of 2 lanes high throughput sequencing is nearly 25GB.

I want to know the number of read in...
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