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alignment assembly atac-seq bam bash bbduk bbmap bcl2fastq bioinfomatics bioinformactics bioinformatics bowtie bowtie2 bwa cancer challenge chip-seq coverage cuffdiff cufflinks demultiplexing deseq2 dna-seq epigenetics error fasta fastq ffpe gatk genetics genome genomics hisat2 illumina index introduction linux mapping metagenomics methylation microbiome minion miseq nanopore nextera nextseq ngs novaseq omics pacbio precisionfda programming python qiagen reads rna rna-seq rnaseq rrbs samtools sequencing snp software statistics trimmomatic truseq vcf velvet wgs workshop

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