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Forum: RNA Sequencing 11-23-2010, 09:29 PM
Replies: 4
Views: 5,284
Posted By ngs
multiple FPKM problem for single gene in gene_exp.diff after running cuffdiff

I ran tophat (1.1.0) without a mouse gtf file. Run cufflinks (0.9.1) without a mouse gtf file. Then run cuffcompare with a mouse gtf file and two gtf files generated from cufflinks for my two...
Forum: Bioinformatics 11-22-2010, 10:38 AM
Replies: 26
Views: 14,678
Posted By ngs
Hi Adam, I ran tophat (1.1.0) without a mouse...

Hi Adam,
I ran tophat (1.1.0) without a mouse gtf file. Run cufflinks (0.9.1) without a mouse gtf file. Then run cuffcompare with a mouse gtf file and two gtf files generated from cufflinks for my...
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