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Forum: Bioinformatics 05-14-2018, 12:54 AM
Replies: 2
Views: 2,072
Posted By berthold
Thanks for the hint Gareth. No I did not find a...

Thanks for the hint Gareth.
No I did not find a way to do it otherwise yet (but it wasn't high priority). There's a student in my group now who is good with Python, I'll consult with him.

best...
Forum: Sample Prep / Library Generation 09-26-2012, 06:12 AM
Replies: 3
Views: 1,894
Posted By berthold
thanks Brett, that helps extraordinarily well :) ...

thanks Brett, that helps extraordinarily well :)
will make my student very happy
best regards,
Berthold
Forum: Sample Prep / Library Generation 09-25-2012, 04:44 AM
Replies: 3
Views: 1,894
Posted By berthold
Hi, did you get an answer to this last year?...

Hi,

did you get an answer to this last year? I'd be interested in such a protocol as well. We actually did the experiment through GATC in Germany some time ago (they did all the steps in-house)....
Forum: Bioinformatics 03-17-2011, 09:07 AM
Replies: 2
Views: 2,072
Posted By berthold
in silico restriction digest of Illumina reads (fastq file)

Hi

I wonder whether anyone has a solution for a restriction digestion script that works on fastq files (Illumina reads), splitting any reads that contain the restriction site into two separate...
Forum: Sample Prep / Library Generation 03-15-2011, 07:28 AM
Replies: 19
Views: 5,762
Posted By berthold
Perl script available for "digesting" fastq files?

Hi,

I'd like to come back to this thread. I've done it - mixed a lot of different PCR reactions (with different primers), and had them co-ligated, fragmented and Illumina-sequenced by a service...
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