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Forum: Bioinformatics 12-06-2014, 08:12 AM
Replies: 4
Views: 1,266
Posted By stellx
Hi! Thanks for your help. I just wanted to...

Hi! Thanks for your help.
I just wanted to mention - my Cygwin is 32 bit. (i read there will be packages missing when I use 64 bit cygwin, hence)
OS is 64 bit with a 20GB RAM.

Does this help?
Forum: Bioinformatics 12-06-2014, 07:26 AM
Replies: 4
Views: 1,266
Posted By stellx
BWA index error in cygwin

Hi,
I'm using Cygwin (32 bit) on win 7) for analysis.

Bwa index on hg19 gave me this output:
[bwt_gen] Finished constructing BWT in 695 iterations.
[bwa_index] 4644.70 seconds elapse....
Forum: Bioinformatics 11-07-2014, 07:26 AM
Replies: 0
Views: 777
Posted By stellx
Help with SciPy installation

Hi all,
I'm not much of a coder - I am trying to install scipy on Cygwin (Win 7 machine), but I aam faced with this error:
I tried using :
apt-cyg install python-numpy python-scipy...
Forum: The Pipeline 10-01-2014, 06:53 AM
Replies: 0
Views: 3,681
Posted By stellx
MIPs/MIPgen - multiplexing pipeline

Hi,
I'm new to the whole sequencing/bioinformatics domain; and I was wondering if anyone knows how to proceed with using the MIPgen analysis (https://github.com/shendurelab/MIPGEN/tree/master/tools)...
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