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Search: Posts Made By: ksherwood
Forum: Bioinformatics 11-25-2011, 02:00 PM
Replies: 4
Views: 1,816
Posted By ksherwood
Thank you for all the useful pointers! From...

Thank you for all the useful pointers!

From a slightly different angle;

Rather than trying to identify a few stably expressed miRNA to use for normalization, are there any suggestions for an...
Forum: Bioinformatics 11-24-2011, 09:55 AM
Replies: 4
Views: 1,816
Posted By ksherwood
Identifying NDE genes as controls

Thank you very much for that help!

I was wondering if the R package would work for miRNA data? I have a miRNA seq dataset (nanostring) of ~700miRNA and need to identify the least variable (i.e....
Forum: Bioinformatics 11-18-2011, 04:32 PM
Replies: 4
Views: 1,816
Posted By ksherwood
Identifying nde genes as controls

Hi all,

Most of us are interested in identifying differentially expressed genes within datasets, however I was wondering if anyone had tried to identify NON DIFFERENTIALLY EXPRESSED genes- perhaps...
Forum: Bioinformatics 04-11-2011, 06:51 AM
Replies: 2
Views: 1,773
Posted By ksherwood
baySeq

Hi,
I would appreciate some help from anyone out there that might be able to assist!

I am using baySeq to analyse the DGE-tag illumina sequenced data. I have also used DESeq and edgeR. I am...
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