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Forum: Bioinformatics 12-20-2012, 12:15 PM
Replies: 2
Views: 2,014
Posted By zimmernv
I get this problem as well. Since my setup is...

I get this problem as well. Since my setup is nearly identical, I'm not going to write down all the details. Why does the use of Ensembl GTF files and the Ensembl genomes then lead to XLOC values in...
Forum: Bioinformatics 12-19-2012, 12:41 PM
Replies: 14
Views: 7,147
Posted By zimmernv
Hey Alejandro, I tried it again with "real"...

Hey Alejandro,

I tried it again with "real" exons, and I got 1 differentially-expressed exon rather than 0. So, as you implied, the difference is not substantial (though that 1 hit is very...
Forum: Bioinformatics 12-12-2012, 12:49 PM
Replies: 14
Views: 7,147
Posted By zimmernv
thanks ... one more question

Hey Alejandro,

Thanks for the response. That fixed the issue and I can now visualize my results.

Somewhat astonishingly, the differential exon usage test does not yield any positive...
Forum: Bioinformatics 12-03-2012, 08:22 AM
Replies: 14
Views: 7,147
Posted By zimmernv
Hey Francisco, I have the same "Error:...

Hey Francisco,

I have the same "Error: match.arg()" that you had previously. I have the most up-to-date versions of R (2.15.2), DEXSeq (1.4.0), and Bioconductor (2.11) -- or so I think. But the...
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