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Forum: Bioinformatics

11-05-2013, 05:11 AM

Replies: 3

QC'ing NGS data

Views: 1,566

Posted By bw.

Thanks gringer - I took a look at that Galaxy...

Thanks gringer - I took a look at that Galaxy instance, but didn't see much in the way of QC (other than FastQC).

Forum: Bioinformatics

11-04-2013, 11:39 PM

Replies: 3

QC'ing NGS data

Views: 1,566

Posted By bw.

QC'ing NGS data

Hi all,
What tools are people using for QC'ing the initial stages of NGS data analysis?

I'm thinking tools that run on
- unaligned .fastq
- aligned .bam
- single vs. paired end
-...

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