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Forum: Bioinformatics 04-28-2009, 09:49 AM
Replies: 5
Views: 5,380
Posted By canuck
From my recollection, the genome size was 5Mbp...

From my recollection, the genome size was 5Mbp (bacterial genome).
Forum: Bioinformatics 04-28-2009, 05:19 AM
Replies: 5
Views: 5,380
Posted By canuck
Velvet de novo assembly to amosvalidate

No. I got only as far as you. Amosvalidate also failed for me. Sorry I haven't looked at this for quite a while and haven't tried anything further.

On another topic, do you know of any way to...
Forum: Bioinformatics 08-20-2008, 09:16 AM
Replies: 5
Views: 5,380
Posted By canuck
Velvet de novo assembly to amosvalidate

Has anyone successfully put a Velvet de novo assembly (*.afg) file through amosvalidate? Specifically, GS FLX data without a reference genome?
I can't seem to generate a valid amos-bank (error: No...
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