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Forum: Bioinformatics 11-04-2014, 04:53 AM
Replies: 3
Views: 3,612
Posted By poudap
how to set query coverage treshold and sequence identity

As I run blast in results, those hit with even 1% coverage of query is included, how I can limit the results to at least 60% query coverage with percentage identity 80.
Forum: Bioinformatics 11-03-2014, 07:48 AM
Replies: 22
Views: 76,169
Posted By poudap
Unfortunately the $(cat Strains/*.fasta) command...

Unfortunately the $(cat Strains/*.fasta) command did not work.

The command space seperated also gave error:
BLAST options error: File Sample_no2.fasta does not exist.
Forum: Bioinformatics 10-30-2014, 09:27 AM
Replies: 22
Views: 76,169
Posted By poudap
How I can make custom database in batch?

I am wondering if you could tell me how I can make a database from different files in batch? The commands like entry_batch does not respond.
I have also used below command but it gives the error...
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