SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 5 of 5
Search took 0.00 seconds.
Search: Posts Made By: zzta
Forum: Bioinformatics 04-30-2018, 10:02 PM
Replies: 20
Views: 22,707
Posted By zzta
So the iv object already accounted for the...

So the iv object already accounted for the 1-based counting and end inclusive (information from the GFF_reader documentation of HTSeq) when calculating the length? So why do you need a +1 again? The...
Forum: Bioinformatics 11-20-2014, 10:45 AM
Replies: 6
Views: 19,536
Posted By zzta
Tried getting dendrogram but no success

Dear all,

Sorry for reviving the thread, but I have plotted a heat map and was proceeding to tree-cutting.

But the value rowDendrogram was no where to be found when I did:

> hm <-...
Forum: Bioinformatics 04-22-2014, 06:12 AM
Replies: 6
Views: 3,301
Posted By zzta
Using GBrowse_syn to visualize mauve output

Sorry to revive this thread, but how did you accomplish the visualization with Gbrowse_syn? I'm a newbie here, so, thank you for your patience :)

I have installed GBrowse and updated it already, I...
Forum: Bioinformatics 04-04-2014, 02:34 AM
Replies: 4
Views: 1,730
Posted By zzta
I use the ls command: ls...

I use the ls command:

ls *suffix_that_all_sample_directories_have_in_common/transcripts.gtf > all_assemblies.txt
Forum: General 03-02-2014, 07:08 PM
Replies: 16
Views: 42,996
Posted By zzta
Sorry to revive this thread, but exons or CDSs...

Sorry to revive this thread, but exons or CDSs are not the only thing transcribed, so how can we account for non-coding RNAs? My understanding is that they are also part of the transcriptome...
Showing results 1 to 5 of 5

 


All times are GMT -8. The time now is 07:56 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO