Forum: Bioinformatics
02-25-2015, 06:25 AM
|
|
Replies: 4
Views: 2,043
|
|
Forum: Bioinformatics
02-24-2015, 06:01 AM
|
|
Replies: 4
Views: 2,043
Hi!
Thanks for the reply :)
Yes. Running...
Hi!
Thanks for the reply :)
Yes. Running w/out the "--casava" option was the first thing that I did. However, I got some weird Kmer profiles. FASTQC doesn't detect any adapter content /...
|
|
Forum: Bioinformatics
02-24-2015, 01:27 AM
|
|
Replies: 4
Views: 2,043
Casava FASTQ from SRA
Dear all,
I am currently trying to perform quality checks on a set of FASTQ files (downloaded from SRA) that (according to the authors) were generated using CASAVA 1.8.1 pipeline.
Since all...
|
|
Forum: Bioinformatics
01-31-2013, 09:06 AM
|
|
Replies: 6
Views: 8,193
|
|
Forum: Bioinformatics
01-30-2013, 03:44 AM
|
|
Replies: 6
Views: 8,193
|
|
Forum: Bioinformatics
01-29-2013, 06:15 AM
|
|
Replies: 6
Views: 8,193
BWA index segmentation fault
Dear all,
I'm having some difficulties trying to index a reference genome using BWA -a bwtsw.
I am using BWA 0.6.2 version and I tried to index the Hg19 but BWA fails to complete the index.
...
|
|
Forum: Bioinformatics
01-11-2013, 03:42 AM
|
|
Replies: 2
Views: 2,033
|
|
Forum: Bioinformatics
01-10-2013, 03:56 AM
|
|
Replies: 2
Views: 2,033
Extremely high Coverage in some regions
Dear all,
I am currently working with NGS data for one individual sequenced using Illumina HiSeq 2000 (13-16x coverage).
I follow some standard pipelines to align and prepare the data for variant...
|
|
Forum: Bioinformatics
12-02-2010, 09:26 AM
|
|
Replies: 0
Views: 2,311
New Tools to analyze Next Gen Seq data
Dear all,
I'm currently using GATK and Samtools to analyze some NGS data from the 1000genomes project.
However I'm having some difficulties in understanding what I can do with the recalibrated...
|
|
Forum: Bioinformatics
11-25-2010, 06:06 AM
|
|
Replies: 2
Views: 3,777
|
|
Forum: Bioinformatics
11-24-2010, 02:24 AM
|
|
Replies: 2
Views: 3,777
Tabix Error on Ubuntu 10.04
Dear all,
I'm having problems installing Tabix on Ubuntu 10.04.
Samtools is already installed and working properly. I downloaded the tabix bz2 file from the sourceforge webpage, extracted all the...
|
