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Forum: Bioinformatics

05-24-2018, 01:08 PM

Replies: 1

Error encountered when running kmercountexact.sh from bbmap

Views: 1,909

Posted By lfaller

Error encountered when running kmercountexact.sh from bbmap

Hi all,

I am encountering a java.lang.AssertionError when trying to run kmercountexact.sh.

The two input files are 820 Mb each. I also tried running this script with subsetted data of the...

Forum: Illumina/Solexa

07-26-2017, 08:49 AM

Replies: 3

Advice needed for --use-bases-mask option (bcl2fastq)

Views: 4,806

Posted By lfaller

Thank you for suggestion! I went back to...

Thank you for suggestion!

I went back to the lab tech and asked her to take a critical look at the indices. She regenerated the file using the Illumina Experiment Manager and now it worked. I...

Forum: Illumina/Solexa

07-11-2017, 09:45 AM

Replies: 3

Advice needed for --use-bases-mask option (bcl2fastq)

Views: 4,806

Posted By lfaller

Advice needed for --use-bases-mask option (bcl2fastq)

Hi all,

A colleague in the lab asked me to demultiplex a recent NextSeq run. She loaded it with samples prepared from two libraries. One library had single indices and one had dual indices. She...

Forum: Introductions

07-11-2017, 09:25 AM

Replies: 0

Hello from Boston

Views: 878

Posted By lfaller

Hello from Boston

Hello everyone,

I've been working in the bioinformatics field for a few years now but the learning never stops. I'm particularly interested in the biology of metagenomics and microbial communities...

Showing results 1 to 4 of 4

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