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Search: Posts Made By: jayce_ocean
Forum: Bioinformatics 03-04-2011, 01:07 AM
Replies: 3
Views: 4,729
Posted By jayce_ocean
any trick?anyone have idea?or any settings in...

any trick?anyone have idea?or any settings in GATK i need to twist on?please help to share some idea or experience...thanks..
Forum: Bioinformatics 03-04-2011, 12:44 AM
Replies: 3
Views: 4,729
Posted By jayce_ocean
i had done reheader and add the @RG tag referring...

i had done reheader and add the @RG tag referring to my merged bam file. But still, GATK always throw an error message stating the read error message or output each of every bam file results in each...
Forum: Bioinformatics 03-04-2011, 12:40 AM
Replies: 3
Views: 4,729
Posted By jayce_ocean
GATK calling Merged Bam files

Dear All,

can share your idea? i have tried to merge my bam files (bam file1, bam file2...so on) using samtools and picard. After then, i used GATK to call the SNP and refer to the merged bam...
Forum: Bioinformatics 09-07-2010, 07:15 PM
Replies: 3
Views: 6,894
Posted By jayce_ocean
SOAPAligner output format

hi

i am interested to know the SOAPAligner output format..can anyone share it?thanks..
Forum: Bioinformatics 09-07-2010, 12:43 AM
Replies: 1
Sam
Views: 1,466
Posted By jayce_ocean
convert .sam file to SOAPAligner

hi,

i am also looking on any tool which able to convert .sam file or .bam file into SOAPAligner '<Alignment.soap.sort.chrN> '

SOAPsnp command:
soapsnp -i <Alignment.soap.sort.chrN> -d...
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