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Forum: Bioinformatics 11-19-2010, 05:08 AM
Replies: 1
Views: 1,927
Posted By mrxcm3
Samtools version 1.0.7 and 1.0.10 different pileup

Hi

When I run pileup in samtools (samtools pileup -f ref.fa input.bam > results.pileup) I get considerably less reads when using v1.0.10 than 1.0.7. For example I have a 6kb amplicon - every base...
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