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Forum: De novo discovery 01-21-2017, 12:19 PM
Replies: 5
Views: 6,265
Posted By NYGen
Hey GAFA, I would look into estimating repeat...

Hey GAFA, I would look into estimating repeat content, which you can do with Repeat Explorer (there was at my last check a Galaxy server specifically for doing this analysis quickly in a GUI). My...
Forum: De novo discovery 06-09-2015, 02:35 PM
Replies: 5
Views: 6,265
Posted By NYGen
@pmiguel - I doubt that the FCM analysis is off,...

@pmiguel - I doubt that the FCM analysis is off, as we did 3 replicates and they were consistent around the value from above. I hear you, though, about the possibility of standards being off, so I'm...
Forum: De novo discovery 06-05-2015, 01:02 PM
Replies: 5
Views: 6,265
Posted By NYGen
Large discrepancy between de novo assembly versus actual biological genome size

Hello everyone,

Iím in the midst of assembling a eukaryotic genome for the first time, working in a non-model plant species, and I could use some insight: my data consists of reads from a full...
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