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Forum: RNA Sequencing 06-04-2013, 01:32 AM
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Views: 2,138
Posted By canhu
Question How to deal with multiple accepted_hits.bam file as input into cuffdiff?

Hello All,

Because my data include paired-end reads and single-end reads, so i run the tophat twice as manual recommened. Aslo, two bam files result from only one sample, were produced by Tophat....
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