Forum: Ion Torrent
06-10-2013, 07:25 AM
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Replies: 3
Views: 5,635
Removing Duplicate Reads from Torrent data
Does anyone have any experience with removing duplicate reads from Ion Torrent data? Any idea if the 454-designed programs work well with Torrent (e.g., cd-hit-454)? Or any suggestions for other...
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Forum: Literature Watch
04-18-2013, 09:52 AM
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Replies: 29
Views: 22,727
Ray Meta - taxonomy and gene ontology
Hello,
I have a general question about the way Ray Meta works. When the taxonomy and gene ontology profiles are provided, I assume that is only for the assembled contigs? Or would that also...
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Forum: Bioinformatics
11-28-2012, 04:03 PM
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Replies: 9
Views: 2,457
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Forum: Bioinformatics
07-06-2011, 04:04 PM
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Replies: 5
Views: 4,603
similar cuffmerge problem
I am having a similar problem, where I have transcripts that do not show up in my merged file. I can find the transcripts (and associated FPKM's) in both original gtf files that I am trying to merge,...
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Forum: RNA Sequencing
11-29-2010, 06:04 AM
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Replies: 15
Views: 23,350
Thank you everyone for the replies!!
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Thank you everyone for the replies!!
golharam - thank you for pointing me to that paper!
Simon - sorry for making you repeat everything over again -- if there is a "better" post for me to look...
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Forum: RNA Sequencing
11-16-2010, 04:00 PM
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Replies: 15
Views: 23,350
Biological replicates for RNA-seq
Hi all,
I'm not sure if this has already been discussed elsewhere, but after looking around I didn't find anything directly answering my question, so if it has already been discussed, sorry for...
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