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Search: Posts Made By: lucyf
Forum: Bioinformatics 10-11-2018, 03:48 AM
Replies: 0
Views: 2,127
Posted By lucyf
Post featureCounts output to DESeq2?

I am doing an RNA-seq analysis where I have used featureCounts to count the number of reads per gene feature. The output looks like this:

Geneid Chr Start End Strand Length sample.sorted.bam...
Forum: Bioinformatics 10-08-2018, 12:50 AM
Replies: 0
Views: 1,426
Posted By lucyf
Exclamation HTSeq-count returns all 0's?

I am using HTSeq-count to count the number of gene features in my RNA-seq samples. I did the original alignment using HISAT2 with a FASTA file, and the HTSeq-count with a GTF file from the same...
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