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Forum: Events / Conferences 02-06-2013, 06:35 AM
Replies: 3
Views: 2,282
Posted By The Snow
Is there someone that already attended to one of...

Is there someone that already attended to one of the BGI workshop?
Forum: Bioinformatics 10-17-2012, 05:45 AM
Replies: 4
Views: 1,923
Posted By The Snow
No one? :(

No one? :(
Forum: Bioinformatics 10-11-2012, 05:52 AM
Replies: 4
Views: 1,923
Posted By The Snow
Extract aligned reads from a BAM file above a certain threshold

Hello everybody,

I have the following problem: I have a bam file with all the aligned sequences (it was filtered with bamtools filter -isMapped true).

However I would like to filter not only...
Forum: Bioinformatics 09-03-2012, 08:09 AM
Replies: 123
Views: 47,053
Posted By The Snow
Hello, I have the following problem using...

Hello,

I have the following problem using Tablet. When I import bam files sorted with samtools (I understood that .bai seems to be mandatory) I do not have any issue.
However when I try to import...
Forum: Bioinformatics 06-08-2012, 12:02 AM
Replies: 2
Views: 1,810
Posted By The Snow
Yeah, that's what I've thought. The problem is...

Yeah, that's what I've thought. The problem is related to the result: if I have 740 reads of virus X and 50 reads of virus Y, how I can assure that we are not in presence of two viruses but just one...
Forum: Bioinformatics 06-07-2012, 08:37 AM
Replies: 2
Views: 4,498
Posted By The Snow
I had a problem like this when I prepared the csv...

I had a problem like this when I prepared the csv using Excel. Try to create it using Linux (e.g. gedit).

That was my case, I hope can work also for you.

Fabio
Forum: Bioinformatics 06-07-2012, 08:06 AM
Replies: 2
Views: 1,810
Posted By The Snow
bwa multi-alignment behaviour

Hello everybody,

I'm quite newbie with bioinformatic, so please forgive me if this is a silly question.

Currently I'm align my reads (100bp, single end) against a .fasta containing a list of...
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