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Forum: Bioinformatics 12-16-2014, 06:14 PM
Replies: 0
Views: 1,441
Posted By misagh
Question To remove or to keep duplicates in alignment of NGS paired reads to a set of contigs

I have a SAM file (http://samtools.github.io/hts-specs/SAMv1.pdf) containing alignments of NGS paired reads against a set of assembled contigs (de novo).

If I might need to infer some information...
Forum: Bioinformatics 04-26-2013, 08:12 PM
Replies: 1
Views: 2,788
Posted By misagh
Finding contig repeat counts by mapping contigs to the reference genome

Hi guys, I have a set of contigs of genome G (using de novo assembly by Velvet) and I also have the complete sequence of the reference genome G. I want to know the repeat count (an integer number) of...
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