SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 4 of 4
Search took 0.00 seconds.
Search: Posts Made By: vout
Forum: Bioinformatics 12-06-2016, 07:47 AM
Replies: 90
Views: 14,467
Posted By vout
In fact, Megahit does not read the input files...

In fact, Megahit does not read the input files multiple times. It converts the fastq/a files into a binary format and read the binary file multiple times. I guess that cache locality is the key....
Forum: Bioinformatics 01-05-2016, 06:49 PM
Replies: 15
Views: 2,998
Posted By vout
sapidissima - I think it is true that the...

sapidissima -

I think it is true that the coverage insufficient to obtain a good assembly. I suggest to use "--min-count 1" and "--k-step 10" for Megahit to rescue more low coverage regions. You...
Forum: Bioinformatics 06-18-2015, 03:51 PM
Replies: 14
Views: 3,127
Posted By vout
@GenoMax @Holinder Its source code is available...

@GenoMax @Holinder
Its source code is available at https://github.com/voutcn/megahit
Latest release can be downloaded at https://github.com/voutcn/megahit/releases
Forum: Bioinformatics 06-18-2015, 06:42 AM
Replies: 14
Views: 3,127
Posted By vout
Hi Holinder, Today we've just released a new...

Hi Holinder,

Today we've just released a new version of MEGAHIT (0.3.0-beta), where IDBA-UD's local assembly algorithm is introduced. Basically it provides similar high standard assemblies as...
Showing results 1 to 4 of 4

 


All times are GMT -8. The time now is 11:19 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO